Patterns of β-diversity and similarity reveal biotic homogenization of epiphytic lichen communities...
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Patterns of b-diversity and similarity reveal biotichomogenization of epiphytic lichen communitiesassociated with the spread of black locust forests
Juri NASCIMBENEa,*, Lorenzo LAZZAROb, Renato BENESPERIb
aDepartment of Life Sciences, University of Trieste, via Giorgieri 10, I-34100 Trieste, ItalybDepartment of Biology, University of Florence, via G. La Pira 4, I-50121 Florence, Italy
a r t i c l e i n f o
Article history:
Received 24 January 2014
Revision received 8 August 2014
Accepted 27 October 2014
Available online
Corresponding editor:
Peter D Crittenden
Keywords:
Functional homogenization
Nitrogen-tolerant lichens
Richness agreement
Species turnover
* Corresponding author.E-mail address: [email protected] (J. Nasci
http://dx.doi.org/10.1016/j.funeco.2014.10.0061754-5048/ª 2014 Elsevier Ltd and The Britis
a b s t r a c t
We compared epiphytic lichen communities of native broadleaved and secondary black
locust (Robinia pseudoacacia) forests to detect possible differences in community structure
that could be indicative of biological homogenization enhanced by the replacement of
native by black locust forests. The study was carried out in two areas of Italy with different
bioclimatic conditions using a balanced stratified random sampling. Results reveal a dif-
ferent pattern of community structure between native and black locust forests across the
two regions that may reflect a process of biological homogenization. In particular, lichen
communities of black locust forests share several species between the two study regions.
This pattern of floristic homogenization parallels with a functional homogenization related
to the spread of highly competitive species. This research provides early evidence that the
decrease of native forests associated with the spread of black locust is a mechanism
triggering biological homogenization of the epiphytic lichen biota.
ª 2014 Elsevier Ltd and The British Mycological Society. All rights reserved.
Introduction 2001), its influence on shaping epiphytic lichen communities
Biotic homogenization (BH) is a process that threatens bio-
diversity, leading to an increase of similarity among biota
worldwide (Baiser et al., 2012). The invasion of alien species
that replace local species over both space and time is among
the main drivers of BH (McKinney and Lockwood, 1999; Olden
and Rooney, 2006; Rahel, 2002). While this mechanism is well
documented for vascular plants and several faunistic groups
(Blair, 2001; Duncan and Lockwood, 2001; Gaertner et al., 2009;
Hors�ak et al., 2013; McKinney, 2004; Radomski and Goeman,
1995; Rahel, 2000; Rooney et al., 2004; Scott and Helfman,
mbene).
h Mycological Society. Al
still awaits clarification.
In general, epiphytic lichens are known to be sensitive to
forest habitat disturbance (Aude and Poulsen, 2000; Giordani,
2012; Hauck et al., 2013; Johansson, 2008; Nascimbene et al.,
2010, 2013a; Pyk€al€a, 2004) their response often being detect-
able in terms of replacement of forest specialists with gen-
eralist species (Friedel et al., 2006; Matteucci et al., 2012;
Nascimbene et al., 2007; Rogers and Ryel, 2008). Severe
shifts in lichen composition are also associated with the
invasion of alien trees, such as black locust (Robinia pseudoa-
cacia), that replace native temperate forests (Nascimbene and
l rights reserved.
2 J. Nascimbene et al.
Marini, 2010). In this perspective, black locust invasion has
both direct and indirect effects on biodiversity, respectively
changing tree forest and epiphytic community composition.
The change of substratum and differences in forest man-
agement between native and black locust forests are invoked
as potential drivers of the observed shifts in lichen compo-
sition which aremainly related to the establishment of highly
competitive, nitrogen-tolerant and light-demanding species
(Nascimbene et al., 2012). The invasiveness of these lichens in
disturbed habitats (Benesperi et al., 2013; Giordani et al., 2010)
has many similarities with that of several alien species that
behave as biotic homogenizers. For example, a few nitrogen-
tolerant lichens are known to be the only species that are
re-colonizing many European towns, being enhanced by
increasing nitrogen pollution (Davies et al., 2007; Lisowska,
2011; Van Herk et al., 2003). They are also known to estab-
lish in intensively managed woodlands where forest
specialists do not meet their ecological requirements
(Nascimbene et al., 2007).
However, classical analyses of species composition may
only partially reveal the mechanisms determining BH, that
can be better elucidated exploring the contribution of the
components of b-diversity and similarity that are more
informative of the ecological process shaping community
structure (Baeten et al., 2012; Su et al., 2004). This approach
was recently applied to lichen communities with promising
results (Nascimbene et al., 2013b). In particular, using the
conceptual framework provided by Podani and Schmera
(2011), it is possible to evaluate the relative importance of b-
diversity (reflecting species turnover among sites), defined as
the additive result of relative species replacement (R; repre-
senting the fraction of turnover related to the substitution of
species among sites), and relative richness difference
(D; representing the fraction of turnover related to differences
in species richness among sites), versus other possible eco-
logical phenomena, namely nestedness (when species in poor
sites are a subset of species in rich sites) and richness
agreement (representing the largest subset of species for
which two sites are equally species rich), which result from
the additive effects of similarity (S; indicating the degree of
compositional similarity among sites) with the other two
complementary components (S þ D and S þ R respectively).
For further details on this conceptual framework see Podani
and Schmera (2011).
In the present study, we compared epiphytic lichen
communities of native broadleaved-dominated forests and
black locust forests in terms of b-diversity components and
similarity. First, pairwise-comparisons were conducted
between plots of both native broadleaved-dominated and
black locust forests across two bio-climatically different
study regions with the aim of detecting possible differences
in community structure that could be indicative of a process
of BH driven by the replacement of native forests by black
locust forests. Second, we conducted pairwise-comparisons
between plots of both native broadleaf-dominated and
black locust forests within each study region to test whether
or not, at the local level (i.e under similar bioclimatic con-
ditions), lichen community structure is determined by sim-
ilar ecological phenomena between native and black locust
forests.
Materials and methods
Study areas
The study was carried out in two forested areas of Italy with
different bioclimatic conditions: (1) Veneto, Montello, in NE
Italy (46�480 N, 12�080 E), in the dry sub-Mediterranean region
where the epiphytic lichen flora is generally poor (Nimis and
Martellos, 2008), and (2) Tuscany, the hilly region in the
province of Pistoia, in Central Italy (43�590 N, 10�530 E), in the
humid sub-Mediterranean regionwhich is under the influence
of humid maritime winds, promoting more favorable con-
ditions for epiphytic lichens (Nimis and Martellos, 2008).
In Veneto, the study area was a large hill in the northern
part of the Venetian plain, extending over 5 000 ha. The mean
elevation is 200 m (maximum 369 m), 100 m higher than the
surrounding plain. Mean annual temperature is 12.9 �C, Jan.being the coldest month (mean temperature 3e4 �C) and Jul.
the warmest one (mean temperature 22.7 �C). Mean annual
rainfall is 1 100mm,withmaxima in spring and autumn. Forty
percent of the study area is managed for agriculture (arable
fields, hay meadows and vineyards), while the remnant is
covered by forests. The forest landscape is a continuous black
locust matrix with interspersed oak-dominated patches. Pure
black locust stands are the main forest type, covering over
90 % of the forested area. Remnant patches of oak forest
(Quercus petraea and Q. robur) can be found in the central part
of the hill. These formations are coppiced for firewood
production.
In Tuscany, the study area was a hilly landscape in the
Province of Pistoia that is delimited northward by the Tuscan-
Emilian Apennines ridge and southward by the Pistoia plain.
Elevation ranges between 100 and 900 m. Mean annual tem-
perature is 14.4 �C and 9.4� in the lower (100e500 m) and
higher (500e900 m) areas respectively. Mean annual rainfall
ranges between 1300 and 1900mmwith twomaxima in spring
and autumn. At lower elevations, the landscape is dominated
by cultivated (olive-groves and vineyards) and forested areas
mainly dominated by black locust formations. At higher ele-
vations, native forests prevail, while black locust formations
are interspersed in a matrix of deciduous broadleaf for-
mations including chestnut (Castanea sativa), oak (Q. cerris) and
hop hornbeam (Ostrya carpinifolia), coppiced for firewood
production.
In both sites, black locust forests are managed with
20e30 yr rotation cycles, mainly for firewood production.
Stands are usually clear-cut and spontaneously replaced by a
new generation of trees.
Sampling design
Mature stands, including trees ready to be harvested with a
circumference>60 cm,were selected both for black locust and
native forests. Ten 30 � 30 m plots were randomly selected in
different parts of the two study areas to encompass the vari-
ability of each forest type. In total 40 plots were surveyed.
In Veneto, native forests were generally older (60e90 yr)
and had higher mean DBH than any mature black locust for-
est, while in Tuscany it was possible to find native stands
Patterns of b-diversity and similarity reveal biotic homogenization of lichen 3
whose age (30e50 yr) and mean DBH were comparable to
those of black locust mature stands (Table 1).
Slope and canopy cover, were comparable among stand
types in each area, in particular, canopy cover was always
higher than 75 %; elevation slightly differs only for native
forests in Veneto (Table 1). Minimum distance between plots
of the same forest type was greater than 500 m to reduce
spatial dependence. The borders of the plots were at least
30 m from the forest edge to mitigate possible edge-effects. In
black locust stands, only black locust individuals were con-
sidered for the lichen sampling, while in native tree stands the
dominant species were considered: oaks in Veneto, and
chestnut (4 plots) and oak (6 plots) in Tuscany. In each plot, six
trees (circumference �40 cm) were selected for lichen inven-
tory by random sampling, for a total of 240 trees (60 in each
stand type in each of the two study areas).
The lichen sampling followed the European guidelines for
lichen monitoring (Asta et al., 2002). Lichens were sampled
using four standard frames of 10 � 50 cm as sampling grids,
subdivided into five 10 � 10 cm quadrats, which were verti-
cally attached to the tree trunk at the cardinal points with the
lower side at 100 cm from the ground. All lichen species inside
the frames were listed, and their frequency was computed as
the number of 10 � 10 cm quadrats in which the species
occurred. Nomenclature of lichens followed Nimis and
Martellos (2008).
Data analysis
After a preliminary ShapiroeWilk test that indicated a non-
normal distribution of data, a non-parametric KruskaleWallis
ANOVA test was used to detect differences between stand
types for: (1) species richness (cumulative number of species
per plot calculated as the sum of the species found on the six
trees), (2) the species richness of sub-oceanic lichens accord-
ing to Nimis and Martellos (2008), and (3) the contribution of
the guild of nitrogen-tolerant species (expressed as percentage
of the plot species richness) defined by the ecological indicator
value for eutrophication ranging from four (high eutrophica-
tion) to five (very high eutrophication) in the on-line checklist
of Italian lichens (Nimis and Martellos, 2008). In these analy-
ses, the plot was used as replicate to avoid pseudo-replication.
According to Siegel and Castellan (1988), after the Krus-
kaleWallis a test for multiple comparison was applied to
detect differences between forest types (significance level:
P < 0.05).
Table 1 e Mean features (±SD) of the two types of stands in thdifferent letters (a, b) are significantly different at P < 0.05. BL [tree species
Veneto
Black locust
Mean circumference (cm) 85.5 � 13.4a 17
Mean number of trees/plot 88.5 � 8.2a
Canopy cover % 86.1 � 7.2a 8
Slope (%) 7.5 � 5.4a
Elevation (m) 250 � 48.76 ab
The SDR simplex approach (Podani and Schmera, 2011)
was used to estimate the relative importance of b-diversity
components and similarity in our presence/absence data
matrices. The SDR partitions pairwise gamma diversity into
additive components, which are calculated as three comple-
mentary indices measuring similarity, relative species
replacement and relative richness difference. Pairwise-com-
parisons weremade between plot of the same forest type both
across the two study areas and at the local level (i.e. within
each study area). Calculations were computed using the
computer program SDR Simplex (Podani, 2001). In particular,
the three indices were calculated as follows (further details in
Podani and Schmera, 2011).
Similarity (S) was calculated according to the Jaccard
coefficient of similarity:
SJac ¼ a=n (1)
where a is the number of species shared by two sites (plots, in
our context), and n is total number of species.
Richness difference (D) was calculated as the ratio of the
absolute difference between the species numbers of each site
(b, c) and the total number of species, n:
D ¼ 1eðaþ 2minfb; cgÞ=n (2)
Finally, species replacement (R) was given by
R ¼ 2minfb; cg=n (3)
where in (2) and (3) b is the number of species present only in
the first site and c is the number of species present only in the
second site, so that min{b,c} is the smaller number between b
and c representing the number of species in the less rich site
that are replaced by new species in the richest.
The SDR results were graphed with a ternary plot using the
Ternary Plot option in the NonHier routine of the SYN-TAX
2000 package (Podani, 2001). In the ternary plot, each vertex
corresponds to one index (S, D, or R). Each pair of data in the
presence/absence data matrix is plotted according to its sim-
ilarity, richness difference and species replacement values, so
that the proximity of a point to a vertex is proportional to the
respective coefficient value. Non-parametric KruskaleWallis
ANOVA was used to check the significance of the differences
in species replacement, richness difference and similarity
among plots belonging to the two forest types at both spatial
scales (regional and local). A non-parametric multiple com-
parisons test, based on the Siegel and Castellan (1988)
Bonferroni-corrected asymptotic normality-based multiple
comparisons (see also Gr€omping, 2013), was applied after the
e two sites (Veneto and Tuscany). Values marked withblack locust stands; Native[ stands composed by native
Tuscany
Native Black locust Native
4.2 � 44.3b 88.9 � 16a 102.4 � 4.9a
42 � 16b 80.6 � 23a 59.8 � 24b
5.3 � 6.5a 86.4 � 6.2a 84.1 � 7.1a
9 � 5.6a 11.8 � 11a 9.5 � 10a
214 � 33.7b 410 � 226.6a 519.5 � 277.5a
Table 2 e Results of the post hoc test for multiple comparisons (mean values ± SD). Values marked with different letters(a, b) are significantly different at P < 0.05. BL [ black locust stands; Nat [ stands composed by native tree species
Region Stand type Total speciesrichness
Plot level speciesrichness
Plot level richness ofsub-oceanic species
% Nitrophytic species
Veneto Nat 20 3.73 � 1.5a 2.8 � 1.1a 13.11 � 11a
Veneto BL 15 5.33 � 1.1b 1.3 � 0.4b 69.3 � 10b
Tuscany Nat 59 12.1 � 4.3b 3.4 � 1.1a 19.6 � 7.2a
Tuscany BL 30 4.7 � 1.8b 1.0 � 0b 50.1 � 3b
Veneto þ Tuscany Nat 67 7.9 � 5.2a 3.1 � 1.1a 16.35 � 9.6b
Veneto þ Tuscany BL 35 4.9 � 1.4a 1.1 � 0.3b 59.7 � 15a
4 J. Nascimbene et al.
KruskaleWallis to detect differences between S, D and R val-
ues (P < 0.05). ShapiroeWilk test of normality, and Krus-
kaleWallis tests were performed using the shapiro.test and
kruskal.test functions in the stats package of R software ver.
3.01 (R Core Team 2013). Multiple comparison test between
treatments after the KruskaleWallis test was performed using
the kruskalmc function in pgirmess package (Giraudoux, 2013)
of R software ver. 3.01 (R Core Team 2013).
Results
Species richness and biological traits
Seventy threespecieswere found(SupplementaryAppendix1),
35 in black locust and 67 in native forest. Study area, as well as
forest type, had a significant effect on species richness. The
total number of species in each forest typewas lower inVeneto
than inTuscany (Table2). Plots ofnative forests inTuscanyhad
the highest species richness. The number of sub-oceanic spe-
cies was comparable among regions, while it was higher in
native than inblack locust stands.Lichencommunities inblack
locust forests were mainly composed of nitrogen-tolerant
species that represent more than 50 % of their total flora.
Patterns of b-diversity components and similarity
Pairwise-comparisons across the two study areas yielded
significant differences in the structure of lichen communities
Fig. 1 e SDR simplex ternary plots for the two stand type data se
richness difference and species replacement, respectively. Dots
(A), and Black locust forests (B). Mean values of S, D, and R (±SD)
significantly different at P < 0.05.
between native and black locust forests. The latter had higher
similarity (S) and species replacement (R), and lower richness
difference (D) than native forests (Fig 1). Accordingly, black
locust forests had a higher richness agreement (S þ R) and a
lower b-diversity (R þ D) (Fig 1).
At the local scale, different patterns were found between
the two study areas (Fig 2). In Veneto, black locust forests had
higher similarity than native forests while richness difference
and replacement were comparable. Black locust forests had a
higher richness agreement (S þ R) and a lower b-diversity
(R þ D). In Tuscany, the contribution of b-diversity and sim-
ilarity in structuring lichen communities was comparable
between black locust and native forests (Fig 1).
Discussion
Thisstudy revealedadifferentpatternofcommunitystructure,
in terms of b-diversity components and similarity, between
native and black locust forests across the two study regions
that may reflect a process of biological homogenization.
In native forests, the pattern of b-diversity ismainly related
to richness differences between plots of the two study regions,
Tuscany hostingmore rich communities according to itsmore
favorable bioclimatic conditions. In black locust forests, the
contribution of richness differences was far lower than in
native forests, indicating that changes in lichen communities
associated with the spread of black locust tend to reduce the
gap (in terms of species richness) between bio-climatically
ts. The abbreviations S, D and R refer to relative similarity,
represent pairs included in the data sets of native forests
are reported. Values marked with different letters (a, b) are
Fig. 2 e SDR simplex ternary plots for the four data sets at local scale. The abbreviations S, D and R refer to relative similarity,
richness difference and species replacement, respectively. Dots represent pairs included in the data sets of native forest
plots in Tuscany (A); black locust forest plots in Tuscany (B); native forest plots in Veneto (C); black locust forest plots in
Veneto (D). Mean values of S, D, and R (±SD) are reported. Valuesmarkedwith different letters (a, b) are significantly different
at P < 0.05.
Patterns of b-diversity and similarity reveal biotic homogenization of lichen 5
different regions, leading to a general taxonomic pauper-
ization of the lichen biota over large areas. This view is cor-
roborated by the fact that lichen communities exhibited a
balanced richness between the two study regions as suggested
by the high richness agreement in shaping community
structure (Podani and Schmera, 2011). This phenomenon is
the additive result of replacement and similarity that had
higher values in black locust than in native forests. The former
also indicates that a fraction of species turnover contributes to
maintain balanced richness through the substitution of a
given species in one area with another species in the other
area. The latter indicates that lichen communities of black
locust forests share a large part of their species pool between
the two study areas, thus exhibiting a degree of floristic
homogenization (Winter et al., 2009). Since these commun-
ities are dominated by species with similar ecological
requirements, namely nitrogen-tolerant species, it is likely
that the process of floristic homogenization would parallel a
process of functional homogenization that, in this case, leads
to the large scale spread of highly competitive species that are
enhanced by both bark features and management regime
based on frequent disturbances of black locust stands (Pividori
and Grieco, 2003; Motta et al., 2009). This hypothesis is sup-
ported by the pattern of sub-oceanic species whose richness
in native forests is similar between study areas, indicating
that habitat quality may compensate for less favorable cli-
matic conditions (Ellis et al., 2009). In contrast, black locust
forests are scarcely suitable for sub-oceanic species even
under favorable climatic conditions.
At the local scale (i.e under similar bioclimatic conditions),
richness differences were less influential for both native and
black locust forests, reflecting the fact that comparisons were
performed within the same pool of species. However, while in
Tuscany both native and black locust lichen communities
were shaped by a balanced contribution of replacement and
similarity, in Veneto between plot similarity was higher in
black locust than in native forests. This pattern suggests that
in climatically favorable conditions communities of both for-
est types are ruled by the same mechanisms that lead species
to occupy each suitable habitat patch, tending to an even
distribution across the region. In less favorable climatic con-
ditions (i.e. dry climate), environmental filtering may be
responsible for a more patchy composition of lichen com-
munities in native forests that reflect local differences in
habitat conditions. Similarity is instead higher between black
locust plots, indicating that nitrogen-tolerant species com-
posing their communities are able to spread in each suitable
habitat also in this environmental context.
Conclusions
This research provides early evidence that the loss of native
forests associatedwith the spread of black locust forests could
6 J. Nascimbene et al.
be a mechanism triggering biological homogenization of the
epiphytic lichen biota in which highly competitive, nitrogen-
tolerant species are involved. This mechanism produces
similar effects to those observed in studies on the effects of
nitrogen pollution (Van Herk et al., 2003), forest management
(Arag�on et al., 2010; Nascimbene et al., 2007) and global
warming (Aptroot and van Herk, 2007). This indicates that
different types of human disturbances may produce a con-
vergent ecological selection enhancing nitrogen-tolerant
species that act as generalists and outcompete more sensi-
tive lichens. These mechanisms tend to level out species
composition resulting in homogenized biota across regions.
As a consequence, there is mounting evidence that forest
epiphytic lichens are among the most threatened organisms
thorough Europe (Kriebitzsch et al., 2013).
Supplementary data
Supplementary data related to this article can be found at
http://dx.doi.org/10.1016/j.funeco.2014.10.006.
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