Dr. Aga Syed SameerLecturer (Demonstrator)
Department of Biochemistry,
Medical College,
Sher-I-Kashmir Institute of Medical Sciences,
Bemina, Srinagar, Kashmir, 190010. India.
Nucleic Acid MetabolismPyrimidine Metabolism
Pyrimidine Biosynthesis
• UMP (Uridine Monophosphate)• Precursor to
• TMP and CTP
• Utilizes (Substrates)• One Aspartate
• γ-NH3 of Glutamine
• CO2 is recycled (Used in 1st step and released back in last)
• Water molecule
• NAD+
• ATP’s (Two : Till UMP Synthesis)
• Methyl group of THF + GTP {dTMP Synthesis}
• NH3 of Glutamine + ATP (2 Equivalent) {CTP Synthesis}
2 ATP + HCO3- + Glutamine + H2O
CO
O PO3-2
NH2
Carbamoyl Phosphate
NH2
C
N
H
CH
CH2
C
COOO
HO
O
Carbamoyl Aspartate
HN
C
N
H
CH
CH2
C
COOO
O
Dihydroorotate
HN
C
N
H
C
CH
C
COOO
O
Orotate
HN
C
N
C
CH
C
COOO
O
HH
CH2
OH OH
H H
OO
2-O3P
Orotidine-5'-monophosphate
(OMP)
HN
C
N
CH
CH
C
O
O
HH
CH2
OH OH
H H
OO
2-O3P
Uridine Monophosphate
(UMP)
2 ADP +
Glutamate +
Pi
Carbamoyl
Phosphate
Synthetase II
Aspartate
Transcarbamoylase
(ATCase)
Aspartate
Pi
H2O
Dihydroorotase
Quinone
Reduced
QuinoneDihydroorotate
Dehydrogenase
PRPP PPi
Orotate Phosphoribosyl
Transferase
CO2
OMP
Decarboxylase
Pyrimidine Biosynthesis
Enzymes and Reactions• 2 condensation Rxns: form carbamoyl aspartate and
dihydroorotate (intramolecular)
• Dihydroorotate dehydrogenase (FMN) is an intra-mitochondrial enzyme; oxidizing power comes from ubiquinone reduction
• Attachment of base to ribose ring is catalyzed by OPRT; PRPP provides ribose-5-P.
• OMP Decarboxylase enhances the rate of decarboxylation by a factor of 2x1023
• Channeling: • Enzymes 1, 2, and 3 are on same chain;
• Enzymes 5 and 6 are on same chain
CTP and UTP synthesis• UMP is then converted UDP &
UTP
• The conversion takes place by the action of Nucleoside Mono/Di Phosphate Kinases.
• CTP formed from UTP via CTP Synthetase driven by ATP hydrolysis • Glutamine provides amide
nitrogen
Conversion of Ribonucleotidesto Deoxyribonucleotides• Ribonucleotide reductase
• NADP
• Thioredoxin reductase
dTMP synthesis• dUMP formed; produces dTMP via Thymidylate
Synthetase• N5,N10 Methylene THF provides methyl group
• THF is first reduced and then methylated
Regulation• Differs between bacteria and animals
• Bacteria – regulation at ATCase rxn
• Animals – regulation at carbamoyl phosphate synthetaseII
• UDP and UTP inhibit enzyme;
• ATP and PRPP activate it
• Also UMP and CMP competitively inhibit OMP Decarboxylase
Degradation of Pyrimidines• CMP and UMP degraded to bases similarly to purines
• Dephosphorylation
• Deamination
• Glycosidic bond cleavage
• Uracil reduced in liver, forming β-Alanine
• Is then converted to malonyl-CoA used in fatty acid synthesis for energy metabolism
• dTMP is degraded to β-Amino Isobutyrate
• Is then converted to methyl malonyl-CoA used in fatty acid synthesis for energy metabolism
Cancer is a clonal disorder.
It is composed of malignant cells of
several distinguishable characteristics
such as:
immortality,
faster growth,
unable to establish cell-cell
interaction,
propensity to invade, metastasize and
grow in an abnormal cellular
environment.
Hanahan D and Weinberg RA. The hallmarks of cancer. Cell. 2000; 100:57-70.
Cancer
Anti-Folate Drugs • Cancer cells consume dTMP quickly for DNA
replication
• Interfere with Thymidylate Synthase rxn to decrease dTMP production • (fluorodeoxyuridylate – irreversible inhibitor) – also affects
rapidly growing normal cells (hair follicles, bone marrow, immune system, intestinal mucosa)
• Dihydrofolate reductase step can be stopped competitively (DHF analogs)
• Anti-Folates: Aminopterin, methotrexate, trimethoprim
Thymidylate Synthesis and Cancer Chemotherapy
• Thymidylate synthase is target for fluorouracil• Action is 5-fluorouracil (5-FU)is converted to 5-fluoro-2’-
deoxyuridylate (dUMP structural analog)
• Then 5-fluoro-2’-deoxyuridylate binds to the enzyme Thymidylate Synthase and undergoes a partial reaction where part of the way through 5-fluoro-2’-deoxyuridylate forms a covalent bridge between Thymidylate Synthase and N5, N10-Methylene THF and is an irreversible inhibition.• Normally, the enzyme, Thymidylate Synthase and the vitamin would
NOT be linked together permanently
• This type of inhibition is called “suicide-based enzyme inhibition”
Methotrexate• Competitive inhibitor of Dihydrofolate Reductase
• Used in,
• Acute lymphoblastic leukemia
• Osteosarcoma in children
• Solid tumor treatment
• Breast, head, neck, ovary, and bladder
• Prevents regeneration of tetrahydrofolate and removes activity of the active forms of folate
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