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Transcript of SUPPLEMENTARY INFORMATION - media.nature.com · pGalS-tub4. GTP. in the presence of the wild type ....
S U P P L E M E N TA RY I N F O R M AT I O N
WWW.NATURE.COM/NATURECELLBIOLOGY 1
DOI: 10.1038/ncb2863
Gombos et al. Supplementary Figure 1
d
wt T146A
BF DAPI merge BF mergeDAPIclass1 class2 class3
5 10 15 20-0.0050.0000.0050.0100.0150.020
100 µM GTP standard73.3 µM γ-TuSC
V (ml)
A26
0
b
C13S T146A lethal lethal
lethal lethal
c
wtQ12
GC13
GC13
SD70
NE72
QS14
1AL22
4A
Q12G C
13G
D70N E72
Q
Q12G C
13G D
70N
Q12G C
13G S14
1AT14
6AN20
6A
S141A
T146A
C13S D
70N
T146A
L224A
Q12G C
13G T14
6A0
20
40
60
80
100no bud (G1)
small bud (G1/S)
large bud, 1 DAPI(metaphase)
large bud, 2 DAPI(ana-/telophase)
defect
Tub4GTP strain
% o
f cel
ls
a 10 20 30 40 50 60 1Z5V -PREIITLQLGQCGNQIGFEFWKQLCAEHGISPEAI------VTDRKD---VFFYQADDEHYIPRAVL Tub4 MGGEIITLQAGQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTERDDDTKPFFRENSRNKFTPRAIM ****** ***** * * ** ** * * * * ** *** 70 80 90 100 110 120 130 1Z5V LDLEPRVIHSILNSPYAKLYNPENIYLSG------NNWASGFSQGEKIHEDIFDIIDREADGSDSLEG Tub4 MDSEPSVIADVENT-FRGFFDPRNTWVASDGASAGNSWANGYDIGTRNQDDILNKIDKEIDSTDNFEG * ** ** * * * * ** * * ** ** * * * ** 140 150 160 170 180 190 200 1Z5V FVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQS-DVVVQPYNSLLTLKRLTQNADCLVV Tub4 FQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPARSSEVVVQSYNTILALRRLIEDSDATVV * * ** ********** *** * ****** ****** * **** ** * * ** * ** 210 220 230 240 250 260 270 1Z5V LDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTG Tub4 FDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPS ** * * * *** *** * * * * ** *** * **** 280 290 300 310 320 330 340 1Z5V YTPLTTD---QSV--RKTTVLDVMRRLLQPKNVMVSTGT-NHCYIAILNIIQGEVDPTQVHKSLQRIR Tub4 FTPFTSDYIHDDIAHKGHSSYDVMLDLLDPSNSLVSTAMNNPTYFNVYNTIIGNVEPRQISRAMTKLQ ** * * *** ** * * *** * * * * * * * * 350 360 370 380 390 400 1Z5V ERKLANFIPWGPASIQVALSRKSPYLR-------VSGLMMANHTSISSLFERTCRQYDKLRKREAFLE Tub4 QR-I-KFPSWSSSAMHVNIGRRSPYLPLQPNENEVSGMMLSNMSTVVNVFENACNTFDKVFAKGAFLN * * * * * **** *** * * ** * ** *** 410 420 430 440 450 460 470 1Z5V QFRKEDMF---KDNFDEMDTSREIVQQLIDEYHAA---T----------------------------R Tub4 NYNVGDLFQSMQNVQDEFAESREVVQSLMEDYVAAEQDSYLDDVLVDDENMVGELEEDLDADGDHKLV * * ** *** ** * * **
Figure S1 GTP binding to yeast γ-tubulin Tub4. (a) Sequence alignment of Tub4 and human γ-tubulin from the 1Z5V crystal structure, which was used as a template for modelling. Conserved residues are marked with an asterisk. Residues contacting the bound GTPγS are highlighted in red. (b) γ-TuSC purified from insect cells contained 9.4% bound GTP as determined by RP-HPLC on a C18 column 1. Elution profiles of 20 µl of a 100 µM GTP
standard and of 73.3 µM γ-TuSC are shown. The protein concentration was determined using the calculated molar extinction coefficient. (c) Phenotypes of wild type TUB4 cells and nuclear migration defects of a representative ts tub4GTP strain (T146A). (d) Quantification of nuclear migration phenotypes of tub4GTP strains obtained from DAPI stained cultures grown overnight at 30°C.
© 2013 Macmillan Publishers Limited. All rights reserved.
S U P P L E M E N TA RY I N F O R M AT I O N
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Gombos et al. Supplementary Figure 2
c
wt
0 100 200 3000
20406080
100
Time (min)
% o
f cel
ls
N228A
0 100 200 3000
20406080
100
Time (min)
% o
f cel
ls
N206A L224A
0 100 200 3000
20406080
100
Time (min)
% o
f cel
ls
C13S T146A
0 100 200 3000
20406080
100
Time (min)
% o
f cel
ls
null
0 100 200 3000
20406080
100
Time (min)
% o
f cel
ls
d
wt
N228A
C13S T14
6A
N206A
L224A null
0
20
40
60
80
100
bipolar spindle at bud neckcytoplasmic MT misguidancemislocalised spindlemonopolar/disassembled spindleother defect
tub4GTP strain
% o
f met
apha
se c
ells
e
f
1 1.8 3.0 2.9 2.0 2.0 1.4 63 47 19 54 2.4
YPH499
wt N228A
C13S T14
6A
N206A
L224
A
null
YPH499
wt N228A
C13S T14
6A
N206A
L224
A
null
Tub4
YPA+Glu(repression)
YPA+Raf/Gal(induction)
actin
normalized Tub4
g
YPA+Glu
wt
N228A
C13S T14
6A
N206A
L224A null
0
20
40
60
80
100
pGalS-tub4GTP strain
% o
f cel
ls
YPA+Raf/Gal
wt
N228A
C13S T14
6A
N206A
L224A null
0
20
40
60
80
100
no budsmall bud 1DAPIlarge bud 1 DAPIlarge bud 2 DAPImultiple bud/chain
pGalS-tub4GTP strain
% o
f cel
ls
a
inpu
tIP
no H
Awt T14
6AN20
6A
C13S D
70N
T146A
L224
A
Q12G C
13G T14
6A
Spc97-3HA
Tub4
Spc97-3HA
Tub4
wt
T146A
N206A
C13S D
70N
T146A
L224A
Q12G C
13G T14
6A0.0
0.5
1.0
1.5
Tub4GTP strain
Nor
mal
ized
Tub
4am
ount
b
anti-Spc97-3HA IP
brightfield GFP-Tub1Spc42-
mCherrymerge+DNA
wt
N22
8AC
13S
T146
AN
206A
L224
Anu
ll
100 kDa
55 kDa
55 kDa
100 kDa
55 kDa
55 kDa
Figure S2 tub4GTP levels and complex formation. (a) Spc97-3HA was immunoprecipitated (IP) by anti-HA antibodies from cell extracts of ts tub4GTP strains. Before immunoprecipitation, cells were synchronized with α-factor at 23°C and released at 37°C for 2 h. (b) Quantification of a. Error bars represent s.e.m. (normalized Tub4 values in Spc97-3HA Co-IPs of n = 3 independent experiments). See Supplementary Table S3 for raw data. Two-tailed, unpaired Student’s t-test was used to obtain P values. Tub4 in the γ-TuSC is not significantly different between tub4GTP and wild type cells (P ≥ 0.05). (c) TUB4-AID GFP-TUB1 SPC42-mCherry cells with pGalS (null), pGalS-TUB4 (wt) or pGalS-tub4GTP (N228A; C13S T146A; N206A L224A) were synchronised with α-factor, followed by both, galactose and IAA addition. Cells were released from the arrest in the presence of galactose and IAA and fixed at the time
points indicated. Cell cycle progression of DAPI stained cells was analysed. (phenotypes of n = 100 cells for each time point per experiment). (d) MT defects of TUB4-AID pGalS-tub4GTP cells. Cells were treated as in c and analysed 2 h after release, when entering metaphase. Bar, 5 µm. (e) Quantification of d (phenotypes of n = 100 cells per strain per experiment). (f) Overexpression of ectopic pGalS-tub4GTP in the presence of the wild type TUB4 allele in rich medium. Extracts of cells grown overnight at 30°C under repressive (glucose) or inducing (raffinose/galactose) conditions were analysed by immunostaining with the indicated antibodies. (g) Quantification of the nuclear migration phenotypes shows metaphase arrest of cells overexpressing ectopic pGalS-tub4GTP in the presence of the wild type TUB4 allele. Cells were grown as in f. DNA was stained with DAPI. (phenotypes of n = 100 cells per strain per experiment).
© 2013 Macmillan Publishers Limited. All rights reserved.
S U P P L E M E N TA RY I N F O R M AT I O N
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Gombos et al. Supplementary Figure 3
a
b
Tub4
Tub4(+Spc42-yeGFP)+DNA
TUB
4-A
IDTU
B4-
AID
TUB
4Y
PH
499
YP
H50
1
c
d
Tub4Spc42-
mCherrymerge+DNA
wt
T146
AN
206A
Q12
G C
13S
T146
A
wt
0 50 100 150 200 250 300-0.4-0.20.00.20.40.60.81.0
whole cellFRAP ROI
Time (s)
Spc9
7-ye
GFP
fluor
esce
nce
at S
PB (a
.u.) C13S T146A
0 50 100 150 200 250 300-0.4-0.20.00.20.40.60.81.0
Time (s)
Spc9
7-ye
GFP
fluor
esce
nce
at S
PB (a
.u.)
e
-10 s 0 s 60 s 120 s 180 s 240 s 300 s-10 s 0 s 60 s 120 s 180 s 240 s 300 s
wt
T146A
N206A
Q12G C
13G T14
6A0
200
400
600
tub4GTP strain
Tub4
fluo
resc
ence
at S
PB (a
.u.)
Tub4-AID
Tub4-AID
TUB4
YPH499
YPH501
-200
0
200
400
600
800
1000
Strain
Tub4
fluo
resc
ence
at S
PB (a
.u.)
+IA
A
Figure S3 γ-TuSCGTP localizes to SPBs. (a) Calibration of anti-Tub4 immunostaining using a Δtub4 strain (TUB4-AID) in the presence of IAA), two haploid strains containing one ectopic copy of TUB4 (TUB4-AID/TUB4 in the presence of IAA) or the wild type TUB4 (YPH499) and a diploid strain carrying two copies of TUB4/TUB4 (YPH501). Cells were fixed 75 min after release from α-factor when entering metaphase. Bar, 2 µm. (b) Quantification of a shows linearity. Boxes represent upper and lower quartiles (25-75%) with a line at the median, whiskers extend from the minimum to the maximum. 5 independent experiments with each n = 50 cells per strain analyzed. (c) Tub4GTP (class 2: T146A; N206A, class 3: Q12G C13S T146A) localizes to SPBs by anti-Tub4 immunostaining. Conditional lethal tub4GTP cells were synchronized with
α-factor at 23°C and released at 37°C for 2 h. Bar, 2 µm. (d) Quantification of c. Boxes represent upper and lower quartiles (25-75%) with a line at the median, whiskers extend from the minimum to the maximum. 5 independent experiments with n = 50 cells analyzed per experiment. (e) FRAP experiments of Spc97-yeGFP in TUB4-AID cells with TUB4 and a representative tub4GTP mutant (C13S T146A) in the presence of IAA. Cells were released from α-factor arrest into nocodazole containing medium for 2 h. Normalized fluorescence intensity of Spc97-yeGFP at SPBs (top) and images of photobleached cells (bottom) are shown. ROI means region of interest – in this experiment the SPB. As a control the whole cell was bleached. None of the strains showed fluorescence recovery of SPB-associated Spc97-yeGFP. Bars, 5 µm.
© 2013 Macmillan Publishers Limited. All rights reserved.
S U P P L E M E N TA RY I N F O R M AT I O N
4 WWW.NATURE.COM/NATURECELLBIOLOGY
Gombos et al. Supplementary Figure 4
wt D70NT14
6AN20
6A
L224
AN22
8A
C13S D
70N
C13S T14
6A
D70N L2
24A
S141A
T146A
N206A
L224
A
Q12G C
13G T14
6A
kDa20015012010085
7060
50
40
Spc97/Spc98
Tub4
0.87:1
.0:1
0.94:1
.1:1
1.1:1.
4:1
0.76:1
.0:1
0.95:1
.1:1
0.71:0
.73:1
1.2:1.
2:1
0.97:1
.4:1
1.3:1.
3:1
0.99:1
.2:1
0.85:0
.76:1
1.0:1.
3:1Spc97:Spc98:Tub4
wt
C13
S T
146A
d
a
c
b
0.85 ml 1.45 ml 0.85 ml 1.45 ml
GS
T-S
pc11
01-22
0w
tT1
46A
N22
8AC
13S
T14
6AN
206A
L22
4A
Spc98Spc97
Tub4GST-Spc1101-220
Spc98Spc97
Tub4GST-Spc1101-220
Spc98Spc97
Tub4GST-Spc1101-220
Spc98Spc97
Tub4GST-Spc1101-220
Spc98Spc97
Tub4GST-Spc1101-220
GST-Spc1101-220
0.5 1.0 1.5 2.0 2.5-50
050
100150200
V (ml)
A 280
(mA
bs)
0.5 1.0 1.5 2.0 2.5-50
050
100150200
V (ml)
A 280
(mA
bs)
0.5 1.0 1.5 2.0 2.5-50
050
100150200
V (ml)
A 280
(mA
bs)
0.5 1.0 1.5 2.0 2.5-50
050
100150200
V (ml)A 2
80 (m
Abs
)
0.5 1.0 1.5 2.0 2.5-50
050
100150200
V (ml)
A 280
(mA
bs)
Tub4GTP complexGST-Spc1101-220
Tub4GTP complex +GST-Spc1101-220
GST-Spc1101-220/Tub4GTP complex GST-Spc1101-220+Tub4GTP complex
wt
T146
AN
228A
C13
ST1
46A
N20
6AL2
24A
100 kDa85 kDa
70 kDa60 kDa
50 kDa
100 kDa
85 kDa
70 kDa60 kDa
50 kDa
100 kDa85 kDa
70 kDa60 kDa
50 kDa
100 kDa85 kDa
70 kDa60 kDa
50 kDa
100 kDa85 kDa
70 kDa60 kDa
50 kDa
100 kDa85 kDa
70 kDa60 kDa
50 kDa
Figure S4 Analysis γ-TuSCGTP complexes purified from insect cells. (a) SDS-PAGE of purified γ-TuSC (wt) and γ-TuSCGTP. Tub4 gives two bands due to partial cleavage of Met1 as determined by mass spectrometry analysis. Bottom: band intensities of the Coomassie-stained gel were assessed by densitometry. (b) Size-exclusion chromatography of recombinant and purified GST-Spc1101-220 (top left), γ-TuSC (wt) and γ-TuSCGTP with (right) and without (left) the N-terminus of the receptor protein Spc110 (GST-Spc1101-220). γ-TuSC/γ-TuSCGTP and GST-Spc1101-220 were mixed
at a 1:2 molar ratio and analysed by gel filtration. SDS-PAGE of the peak fractions shows that γ-TuSC/γ-TuSCGTP co-elutes with GST-Spc1101-220. (c) Electron micrographs of negatively stained γ-TuSCGTP show typical Y-shaped complexes resembling wild type γ-TuSC 2. Bar, 10 nm. (d) Aligned and classified particles of negatively stained wt γ-TuSC and a representative TuSCGTP (C13S T146A). 1911 particles were analyzed for wild type and 1826 particles for the TuSCC13S T146A mutant and classified into 20 classes each. Bar, 10 nm.
© 2013 Macmillan Publishers Limited. All rights reserved.
S U P P L E M E N TA RY I N F O R M AT I O N
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Gombos et al. Supplementary Figure 5
d
NE
nMTSPB
cMT
N CP
NE
nMT
SPBcMT
N
CP
NE
nMT
SPB
N
CP
NE
nMT
N
CP
wt
N20
6AT1
46A
Q12
G C
13G
T146
Ae
a b
c
wt
T146
AN
206A
Q12
G C
13G
T146
A
BFGFP-Tub1
+DNAwt
0 50 100 150 2000
20406080
100
Time (min)
% o
f cel
ls
T146A
0 50 100 150 2000
20406080
100
Time (min)
% o
f cel
ls
N206A
0 50 100 150 2000
20406080
100
Time (min)
% o
f cel
ls
Q12G C13G T146A
0 50 100 150 2000
20406080
100
Time (min)
% o
f cel
ls
YP
D+
15 µ
g/m
lbe
nom
yl in
DM
SO
YP
D +
DM
SO
14°C 23°C 30°C 33°C 35°C 37°C
wtT146AN206A
Q12G C13G T146AC13S D70N
S141A T146Awt
T146AN206A
Q12G C13S T146AC13S D70N
S141A T146A
f
Figure S5 MT organization defects of tub4GTP strains. (a) ts tub4GTP cells (class 2: T146A; N206A and class 3: Q12G C13G T146A) arrest in metaphase at the restrictive temperature. Cells were synchronized with α-factor at 23°C, released at 37°C and fixed at the time points indicated. Cell cycle progression of DAPI stained cells was analysed. (phenotypes of n = 100 cells per strain per experiment; 5 independent experiments). (b) MT defects of ts tub4GTP cells. Cells were treated as in a and analysed 2 h after release. Bar, 5 µm. (c) Quantification of b. (phenotype of n = 100 cells for each strain per experiment).
(d) Electron micrographs of thin sections stained with uranyl-acetate showing MT phenotypes of ts tub4GTP cells. Cells were treated as in a. Cartoons on the right shows the SPB and MTs of the micrograph on the left. CP, cytoplasm; N, nucleus; NE, nuclear envelope; cMT, cytoplasmic MT; nMT, nuclear MT. Bar, 200 nm. (e) Quantification of d. MT phenotypes of n = 9 cells for wt, 12 for T146A, 6 for N206A, and 11 for Q12G C13G T146A. (f) Benomyl rescue of ts tub4GTP cells. Cells were grown at 23°C and spotted onto benomyl containing plates or control plates and grown at the indicated temperatures.
© 2013 Macmillan Publishers Limited. All rights reserved.
S U P P L E M E N TA RY I N F O R M AT I O N
6 WWW.NATURE.COM/NATURECELLBIOLOGY
Gombos et al. Supplementary Figure 6
d
wt
T146
AN
228A
C13
ST1
46A
N20
6AL2
24A
ef
g
Tub4Spc42-
mCherrymerge+DNA
wt
T146
AN
206A
wt
T146A
N206A-200
0
200
400
600
800
1000
tub4GTP strain
Tub4
fluo
rsce
nce
at S
PB (a
.u.)
10 20 30 40 50 60 FtsZ LSP---------------------EDKELLEYLQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTV Tub1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAI * * * * 70 80 90 100 110 120 130 FtsZ AINTDAQQLIRTKAD--------KKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMV- Tub1 YVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVLDRIRKLADQCDGLQ ** * * * * * * 140 150 160 170 180 190 200 FtsZ --FITCGLGGGTGTGSAPVVAEISK----KIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDT Tub1 GFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADC * ****** * * * * ** * * * * * * 210 220 230 240 250 260 FtsZ LVVIPNEKLFEIVPNMP--LKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKA---------- Tub1 TFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHF ** * * ** *** 270 280 290 300 310 320 330 FtsZ -------------------------------------------------VMNNGGLAMIGIGESDSE Tub1 PLVSYSPVLSKSKAFHESNSVSEITNACFEPGNQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQ * 340 350 360 370 380 390 400 FtsZ KRAKEAVSMA------------LNSPLLDVDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLDPN Tub1 VKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAK * * * ** * ** 410 420 430 440 FtsZ ATII--WGATIDENLENTVRVLLVITGVQSRIEFTDTGLKRKKLE Tub1 RAFVHWYVGEGMEEGEFTEAREDLAALERDYIEVGADSYAEEEEF * * * **
GFP-Tub1Spc42-
mCherryBF
GFP-Tub1Spc42-
mCherry
GFP-Tub1Spc42-
mCherryBF BF
TUB
4-A
ID T
UB
4TU
B4-
AID
TUB
4-A
ID tu
b4N
228A
ND
C10
ND
C10
ND
C10
ND
C10
-AID
ND
C10
-AID
ND
C10
-AID
0 min 40 min 100 min
normal bipolar spindlecMT misguidancemislocalized spindlespindle with too few MTsserious spindle defect(broken/monopolar/no spindle)
0 20 40 60 80 1000
20406080
100
Time (min)%
cel
ls w
ithM
Ts a
t SPB
TUB4-AID TUB4TUB4-AID TUB4 NDC10-AID
0 20 40 60 80 1000
20406080
100
Time (min)
% c
ells
with
MTs
at S
PB
0 20 40 60 80 1000
20406080
100
Time (min)
% c
ells
with
MTs
at S
PBTUB4-A
ID TUB4
TUB4-AID
TUB4
NDC10-A
ID
020406080
100
tub4GTP strain
% m
itotic
cel
lsTUB4-A
ID
TUB4-AID
NDC10-A
ID0
20406080
100
tub4GTP strain%
mito
tic c
ells
TUB4-AID
tub4N
228A
TUB4-AID
tub4N
228A
NDC10-A
ID
0
20406080
100
% m
itotic
cel
ls
tub4GTP strain
TUB4-AIDTUB4-AID NDC10-AID
TUB4-AID tub4N228A
TUB4-AID tub4N228A NDC10-AID
c
bTub4
Spc42-yeGFP
merge+DNA
wt
N22
8AC
13S
T146
AN
206A
L224
Anu
ll
a
wt
N228A
C13S T14
6A
N206A
L224A null
-500
0
500
1000
1500
2000
tub4GTP strain
Tub4
fluo
resc
ence
at S
PB (a
.u.)
Figure S6 MT nucleation by tub4GTP. (a) Anti-Tub4 immunostaining of TUB4-AID cells (“null”) with TUB4 (wt) or tub4GTP at SPBs in the presence of IAA and nocodazole. Cells were treated as in Fig. 5a. Bar, 2 µm. (b) Quantification of a. Boxes represent upper and lower quartiles (25-75%) with a line at the median, whiskers extend from the minimum to the maximum. n = 50 cells analyzed per strain per experiment. 5 independent experiments were performed. Two-tailed, unpaired Student’s t-test was used to compare samples and to obtain P values. There are no significant differences between TUB4 and tub4GTP cells (P ≥ 0.05), while the null mutant is different from the wild type with P ≤ 0.001. (c) The kinetics of MT re-nucleation in tub4GTP cells is not influenced by functional kinetochores. TUB4-AID NDC10-AID cells with additional TUB4, tub4N228A or NDC10 (as indicated in the figure) were grown and treated with nocodazole as in Fig. 5c. The formation of MTs was followed over time. Middle: For each time point n = 100 cells were analyzed per strain per experiment for MTs at the SPB. The
right panel shows the quantification of cells for MT phenotypes (illustrated in right upper corner). n = 100 cells were analyzed for each time point and strain. (d) Electron micrographs of negatively stained rings of γ-TuSCGTP formed under low pH and low salt conditions. Bar, 25 nm. (e) Alignment of Tub1 and FtsZ by MODELLER. Note the long insertion in Tub1 between residues 261-319, which is not included in our model due to the lack of a homologous template. Conserved residues are marked with an asterisk. The two acidic residues that promote GTP hydrolysis are highlighted in red. (f) Anti-Tub4 immunostaining of ts tub4GTP cells at 37°C in the presence of nocodazole. Bar, 2 nm. (g) Quantification of f. Boxes represent upper and lower quartiles (25-75%) with a line at the median, whiskers extend from the minimum to the maximum. 5 independent experiments with n = 50 cells analyzed per experiment per strain. Two-tailed, unpaired Student’s t-test was used to obtain P values. There are no significant differences between TUB4 and tub4GTP cells (P ≥ 0.05).
© 2013 Macmillan Publishers Limited. All rights reserved.
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Gombos et al. Supplementary Figure 7
GDP exchangesagainst GTP
γ-tubulinbinds GTP
γ-TuSCassembly
GTP
GDP
γ-tubulin
α-tubulin
β-tubulin
Spc97
Spc98
Spc110 γ-tubulin:GTP binds tubulin with high affinity:
MT nucleation
assembly ofMT nucleation
platform
GTP independent γ-tubulin:GDP binds tubulin with low affinity
Figure S7 Model for the GTP/MT nucleation cycle of γ-tubulin. See Discussion for details.
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Gombos et al. Supplementary Figure 8
Fig. 2a
55 kDa
35 kDa
α-Tub4 55 kDa
35 kDa
α-Tub4
α-HAα-HA
250 kDa
130 kDa
100 kDa70 kDa
250 kDa
130 kDa
100 kDa70 kDa
input IP: α-HA
250 kDa130 kDa100 kDa
55 kDa
35 kDa
α-Tub4
250 kDa130 kDa
55 kDa
35 kDa
α-actin
130 kDa
100 kDa
55 kDa
35 kDa
α-Tub4
130 kDa
100 kDa
55 kDa
35 kDa
70 kDa
α-actin
α-HA
130 kDa100 kDa
35 kDa
55 kDa
130 kDa100 kDa
35 kDa
55 kDa
100 kDa
α-Tub4
α-Tub4
α-Tub4
α-HA130 kDa100 kDa
35 kDa
55 kDa
130 kDa100 kDa
35 kDa
55 kDa
YPAD YPAD + IAA
130 kDa100 kDa
55 kDa
35 kDa
130 kDa100 kDa
55 kDa
35 kDa
α-Spc98 α-Spc98
Fig. 2d
Supplementary Fig. S2a
Supplementary Fig. S2f
Figure S8 Full scans of blots. The background on the α-Spc98 blot from Fig. 2a is due to residual α-Tub4 staining after stripping.
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