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Sources of CMD Resistance in Southeast Asia Xiaofei Zhang 2020 August Webinar: Keep the faith: Progress in developing commercially viable CMD resistant varieties for Asia

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  • Sources of CMD Resistance in Southeast Asia

    Xiaofei Zhang2020 August

    Webinar:Keep the faith: Progress in developing commercially viable CMD resistant varieties for Asia

  • High and stable dry matter, CMD, CBSD and whitefly resistance

    High β-carotene, high dry matter, CMD, CBSD and whitefly resistance

    Good cooking quality, low HCN, CMD, CBSD and whitefly resistance

    Donor Development &Population Improvement

    CIATIITA

    High and stable dry matter

    High β-carotene, high dry matter, good cooking quality

    Good cooking quality, low HCN

    Donor Development &Population Improvement & Product Evaluation

    CMD and whitefly resistance, High and stable dry matter

    Donor Development &Population Improvement

    Product Evaluation & Release-variety

    AgrosaviaEmbrapa

    Product Evaluation & Release-variety

    AGI, HLARC, KU, RFCRC

    Provide both trait donors and improved breeding populations with CMD, CBSD, and whitefly resistance to IITA and NARS.

  • 1) 5 IITA clones, all showing high resistance in Tay Nihn;

    2) C33, C39, TME3 and other clones from CIAT and IITA

    3) 10 resistant varieties from the clones collected in Vietnam

    4) 102 CIAT clones containing CMD2 genes according to SSR markers

    5) introduced seeds from Hawaii (progenitors from CIAT and IITA)

    6) 474 seeds for genomic selection derived from CMD donors at CIAT

    Major Sources of CMD Resistance In South-East Asia

  • https://www.cassavabase.org/

    https://www.youtube.com/channel/UC3jrvvzGKKEHzOriDBgnj0AVideo Tutorial

    StandardizationAccessibilityCollaboration

    https://www.cassavabase.org/https://www.youtube.com/channel/UC3jrvvzGKKEHzOriDBgnj0A

  • 407 plots (2018-2019 season)163 varieties collected from Vietnam109 unique varieties based on DNA fingerprint4 replications

    293 plots135 varieties collected from Vietnam94 unique varieties based on DNA fingerprint4 replications

    Remove plots with

  • High heritability indicated high data quality

    CMD symptom increased from 1.5 months after planting to 10 months after planting

    Trait Median Mean Range Vg VeHeritability

    (h2)CMD_1.5MAP 1.25 1.40 1.00-4.00 0.040 0.166 0.33

    CMD_3MAP 1.50 1.64 1.00-4.00 0.090 0.182 0.52

    CMD_6MAP 1.82 1.94 1.00-4.00 0.166 0.195 0.65

    CMD_10MAP 2.00 2.49 1.19-4.00 0.364 0.301 0.74

    Germination 0.63 0.62 0.25-1.00 0.029 0.026 0.72

    yield_plot (kg) 16.00 16.86 0-67.00 34.030 40.490 0.65

    Variation of CMD Resistance

  • samples accession_name 6week 3mon 6mon 10monVN19-1432, VN19-1556 PER262/CR63/TAI9 1.1 1.2 1.4 1.4VN19-442 UNK-CI 1.1 1.2 1.3 1.3VN19-1050, VN19-1039 VNM8/KM57 1.0 1.1 1.4 1.5HG2 HG2 1.0 1.2 1.4 1.4VN19-320 UNQ-44 1.0 1.6 1.2 1.5VN19-773 UNQ-115 1.1 1.2 1.3 1.6VN19-1194, VN19-1184 UNK-F 1.1 1.2 1.2 1.7VN19-390 UNK-CH 1.1 1.2 1.5 1.7VN19-2583 UNK-AR 1.2 1.5 1.6 1.9LC1 LC1 1.1 1.4 1.3 1.6

    KM140 1.5 1.8 2.3 3.4KM297 1.6 1.7 1.7 2.5KM419 1.8 2.2 2.5 2.4

    KU50/KM94 1.4 1.4 1.8 2.3SC8/SC205 1.4 1.5 2.3 3.2Rayong1 1.5 1.7 1.6 3.0

    Rayong60/KM60 1.8 1.9 2.0 3.3

    germin. yield_plot0.62 15.81.00 30.00.77 15.50.68 12.30.34 26.30.97 25.80.72 24.80.44 21.50.65 11.00.75 16.00.77 12.40.27 17.30.89 14.20.61 21.60.34 15.00.42 17.50.58 18.7

    Ten Resistant Varieties were Identified

    Hanatee

  • accession_name count CMD_1 CMD_2 Mean Mother FatherAR11-12 50 1.0 1.0 1.0 C-243 CW259-43AR12-11 48 1.0 1.0 1.0 C-33 CW234-2AR12-57 72 1.0 1.0 1.0 C-33 CW234-2AR14-2 89 1.0 1.0 1.0 C-33 CW257-10AR14-3 92 1.0 1.0 1.0 C-33 CW257-10AR15-6 42 1.0 1.1 1.1 C-33 CW257-12AR17-18 64 1.0 1.0 1.0 C-33 CW258-17AR17-23 54 1.0 1.0 1.0 C-33 CW258-17AR17-3 75 1.0 1.0 1.0 C-33 CW258-17AR18-1 33 1.0 1.0 1.0 C-377 CW257-12AR23-1 93 1.0 1.0 1.0 C-39 CW259-43AR35-1 54 1.0 1.0 1.0 C-243 CW257-10AR37-103 70 1.0 1.0 1.0 C-33 CW259-42AR37-38 77 1.0 1.0 1.0 C-33 CW259-42AR40-19 74 1.0 1.0 1.0 C-39 CW259-42AR40-3 80 1.0 1.0 1.0 C-39 CW259-42AR40-5 57 1.0 1.0 1.0 C-39 CW259-42AR42-3 33 1.0 1.0 1.0 C-413 CW259-42AR42-4 69 1.0 1.0 1.0 C-413 CW259-42AR9-12 55 1.0 1.0 1.0 C-243 CW257-12AR9-14 82 1.0 1.0 1.0 C-243 CW257-12AR9-48 91 1.0 1.0 1.0 C-243 CW257-12AR9-63 86 1.0 1.0 1.0 C-243 CW257-12CR100-2 88 1.0 1.0 1.0 OW181-2 C-377CR100-5 63 1.0 1.0 1.0 OW181-2 C-377CR100-9 45 1.0 1.0 1.0 OW181-2 C-377CR13-8 85 1.0 1.0 1.0 COL1734 C-33CR24-16 76 1.0 1.0 1.0 CM7951-5 C-18CR24-3 90 1.0 1.0 1.0 CM7951-5 C-18CR25-4 89 1.0 1.0 1.0 CM7951-5 C-33CR27-20 50 1.1 1.0 1.1 CM7951-5 C-243CR52A-2 78 1.0 1.0 1.0 C-243 SM1219-9CR52A-4 77 1.1 1.0 1.1 C-243 SM1219-9CR60B-10 95 1.0 1.0 1.0 C-18 TAI8CR61A-1 71 1.0 1.0 1.0 TAI8 C-33IITA-TMS-IBA920057 91 1.0 1.0 1.0IITA-TMS-IBA980505 96 1.0 1.0 1.0IITA-TMS-IBA980581 57 1.0 1.0 1.0TMEB419 83 1.0 1.0 1.0S140 52 2.6 2.6 2.6KM419 56 2.6 2.8 2.7KM94 41 2.8 2.9 2.8KM419 39 3.0 2.9 2.9KM94 35 3.2 2.7 3.0SDA5 52 3.0 2.9 3.0KM419 43 3.5 2.7 3.1KM140 80 3.2 3.1 3.1SDA30 55 3.9 2.9 3.4

    102 CIAT Clones Containing CMD2 Genes according to SSR markers

    12AR12-11

    24AR9-63

    36CR24-3

    48AR40-5

    60VN19-254

    72AR42-3

    84IITA-TMS-

    IBA980581

    96CR52A-2

    108AR11-12

    120CR100-5

    132CR25-4

    144CR60B-10

    11CR60B-10

    23CR52A-2

    35CR27-20

    47AR23-1

    59AR9-48

    71CR24-16

    83CR24-3

    95AR9-63

    107KM94

    119CR100-2

    131IITA-TMS-

    IBA980505

    143AR17-23

    10AR12-57

    22C-33

    34KM505

    46CR24-16

    58C-39

    70AR37-103

    82CR100-5

    94AR9-12

    106HLS11

    118AR9-12

    130CR52A-4

    142AR12-57

    9CR25-4

    21AR17-23

    33CR52A-4

    45CR100-9

    57AR40-19

    69N30

    81KM505

    93IITA-TMS-

    IBA920057

    105AR40-3

    117VN19-254

    129AR40-19

    141AR18-1

    8KM419

    20AR17-18

    32AR42-4

    44AR37-103

    56CR60B-10

    68CR25-4

    80IITA-TMS-

    IBA 980505

    92KM140

    104AR17-3

    116C-33

    128AR23-1

    140CR24-3

    7TMEB419

    19CR100-5

    31AR42-3

    43AR11-12

    55AR18-1

    67IITA-TMS-

    IBA972205

    79AR40-3

    91TMEB419

    103KM419

    115AR42-3

    127AR9-63

    139AR40-5

    6IITA-TMS-

    IBA 980505

    18CR13-8

    30AR35-1

    42AR14-2

    54AR17-18

    66AR17-23

    78AR12-11

    90CR61A-1

    102AR12- 11

    114AR42-4

    126CR13-8

    138AR35-1

    5AR37-38

    17C-39

    29N30

    41VN19-254

    53HLS11

    65AR17-3

    77CR52A-4

    89AR37-38

    101CR52A-2

    113KM140

    125IITA-TMS-

    IBA972205

    137AR37-38

    4AR40-19

    16IITA-TMS-

    IBA980581

    28KM140

    40AR9-14

    52CR100-2

    64AR12-57

    76KM94

    88AR40-5

    100TMEB419

    112AR17-18

    124CR24-16

    136AR14-2

    3CR100-2

    15AR17-3

    27AR18-1

    39CR61A-1

    51AR42-4

    63CR100-9

    75AR23-1

    87AR14-3

    99CR61A-1

    111AR37-103

    123CR27-20

    135N30

    2AR40-3

    14HLS11

    26IITA-TMS-

    IBA972205

    38KM94

    50AR9-14

    62CR13-8

    74KM419

    86AR14-2

    98AR9-48

    110IITA-TMS-

    IBA980581

    122IITA-TMS-

    IBA920057

    134KM505

    1IITA-TMS-

    IBA920057

    13AR9-12

    25AR14-3

    37AR9-48

    49C-33

    61CR27-20

    73AR35-1

    85AR11-12

    97C-39

    109AR14-3

    121CR100-9

    133AR9-14

    ttom left cor col 1 col 2 col 3 col 4 col 5 col 6 col 7 col 8 col 9 col 10 col 11 col 12

    Infected barrier (HL-S11) = 60 plants

    Infected barrier (HL-S11) = 60 plants

    Yield trial design (48 clones)

    rep 1 (48 clones or plots) rep 2 (48 clones or plots) rep 3 (48 clones or plots)

    60m = 12plot x 5m/plot

    Infected barrier (HL-S11) = 60 plants

    Infected barrier (HL-S11) = 60 plants

    PATHWAY/SPRINGKLERS

    PATHWAY/SPRINGKLERS

    Infected barrier (HL-S11) = 60 plants

    50m

    = 10

    plot

    x 5

    m/p

    lot

    Infected barrier (HL-S11) = 60 plants

    Infected barrier (HL-S11) = 60 plants

    Infected barrier (HL-S11) = 60 plants

    Infected barrier (HL-S11) = 60 plants

    Infected barrier (HL-S11) = 60 plants

    Infected barrier (HL-S11) = 60 plants

    Infected barrier (HL-S11) = 60 plants

    Infected barrier (HL-S11) = 60 plants

    Infected barrier (HL-S11) = 60 plants

    Infected barrier (HL-S11) = 60 plants

    43 of 102 clones showed asymptom

    Yield trials were established in Tay Nihn and Dong Nai, in May 2020.

    48 clonesRCBD3 replications20 plants/plot

    For detailed results, please ask Vu Nguyen.

  • Resultado Fecha Resultado Fecha Resultado Fecha Resultado Fecha Resultado Fecha Resultado Fecha1 AR9-12 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/20202 AR9-14 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/20203 AR9-48 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/20205 AR11-12 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 16/6/20206 AR12-11 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/20207 AR12-57 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/20208 AR14-2 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/20209 AR14-3 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Positivo 16/6/2020 Negativo 12/6/202010 AR17-3 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/202011 AR17-18 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/202012 AR17-23 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/202013 AR18-1 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Positivo 16/6/202014 AR23-1 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/202015 AR35-1 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/202016 AR37-38 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/202017 AR37-103 - Negativo 17/06/2020 Negativo 18/06/2020 Negativo 17/06/2020 Negativo 18/06/2020 Negativo 18/06/2020 Negativo 18/06/202018 AR40-3 - Positivo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 16/6/2020 Negativo 12/6/202019 AR40-5 - Negativo 11/6/2020 Negativo 12/6/2020 Positivo 11/6/2020 Negativo 12/6/2020 Negativo 16/6/2020 Negativo 12/6/202020 AR40-19 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/202021 AR42-3 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Positivo 16/6/2020 Negativo 12/6/202022 AR42-4 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 16/6/202023 CR13-8 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/202024 CR24-3 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/202025 CR24-16 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Positivo 16/6/2020 Negativo 12/6/202026 CR25-4 - Negativo 11/6/2020 Negativo 12/6/2020 Positivo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/202027 CR27-20 - Negativo 11/6/2020 Negativo 12/6/2020 Positivo 11/6/2020 Negativo 12/6/2020 Negativo 16/6/2020 Negativo 12/6/202028 CR52A-2 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/202029 CR52A-4 - Negativo 17/06/2020 Negativo 18/06/2020 Negativo 17/06/2020 Negativo 18/06/2020 Negativo 18/06/2020 Negativo 18/06/202030 CR60B-10 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 12/6/2020 Negativo 12/6/202031 CR61A-1 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 16/6/2020 Negativo 12/6/202032 CR100-2 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 16/6/2020 Negativo 12/6/202033 CR100-5 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 16/6/2020 Negativo 12/6/202034 CR100-9 - Negativo 11/6/2020 Negativo 12/6/2020 Negativo 11/6/2020 Negativo 12/6/2020 Negativo 16/6/2020 Negativo 12/6/2020

    CsPLV-qPCR CsTLV-PCR CsCMV-PCR CsXV-PCRN. LSG MUESTRA Observación CsFSaV- qPCR CsNAV-PCR

    Prepare in vitro Plantlets for Thailand

    Virus Inspection Results

    28 clones are available for sharing with TTDI

  • Introduced Seeds from Hawaii

    Harvest Year

    Cross Type

    total seed 26Apr2019

    HIL19PK0201 2017 OP 80HIL19PK0202 2017 OP 210HIL19PK0203 2017 OP 370HIL19PK0204 2017 OP 550HIL19PK0205 2017 OP 525HIL19PK0206 2017 OP 50HIL19PK0207 2017 OP 574HIL19PK0208 2017 OP 102HIL19PK0209 2017 OP 900HIL19PK0210 2017 OP 250HIL19PK0211 2016 OP 39HIL19PK0212 2016 OP 114HIL19PK0213 2016 OP 49HIL19PK0214 2016 OP 87HIL19PK0215 2016 OP 166HIL19PK0216 2016 OP 76HIL19PK0217 2016 OP 21HIL19PK0218 2016 OP 59HIL19PK0219 2016 OP 22HIL19PK0220 2016 OP 36HIL19PK0221 2016 OP 129HIL19PK0222 2016 OP 90HIL19PK0223 2016 OP 38HIL19PK0224 2016 OP 22HIL19PK0225 2016 OP 34HIL19PK0226 2016 OP 156HIL19PK0227 2016 OP 12HIL19PK0228 2016 OP 49HIL19PK0229 2016 OP 110HIL19PK0230 2016 OP 40HIL19PK0231 2016 OP 31Total 4991

    Vietnam

    The seeds for Thailand and Laos are still in process due to the late import permit and COVID-19.

  • Maternal Paternal CIAT Maternal Paternal VNMCOL1505 COL1722 12 CR138 PER183 10COL1505 VEN25 12 COL1722 CR138 11COL1505 MAL3 12 COL1505 VEN25 12CR138 MEX2 12 MAL3 VEN25 12CR138 PER183 12 GM579-13 SM3134-5 14CUB46 CR138 12 COL1505 COL1722 14CUB46 CM2766-5 12 CR138 MAL3 14GM579-13 SM3134-5 12 MAL3 VEN25 14MAL3 PER183 12 GM6125-13 SM2828-28 8MAL3 VEN25 12 SM3150-17 C33 8MEX2 PER496 6 SM3134-5 GM10054B-1 12PER496 COL1722 5 SM3134-5 C19 12SM1127-8 PER496 12 C33 SM2828-28 12VEN25 PER496 12 GM7672-5 SM2828-28 12C33 HB60 12 SM3110-15 C243 12C33 SM2828-28 12 SM3134-5 GM10055B-1 12C413 SM2828-28 12 HB60 GM7673-3 12GM579-13 C39 10 GM8868-85 C33 12GM7672-5 SM2828-28 12 C19 HB60 12GM8868-85 C243 12 C413 HB60 12GM8868-85 GM10055B-1 12 HB60 GM10054B-1 12GM9124-12 GM10054B-1 9 GM10054B-2 HB60 12GM9125-5 C243 7 GM7673-3 HB60 12HB60 GM7673-3 12 C243 SM2828-28 12SM2828-28 C19 12 SM2828-28 C39 12SM3110-15 C243 5 GM7672-7 SM2828-28 12SM3110-15 GM10055B-1 6 GM7671-2 SM3137-40 12SM3134-5 C19 12 SM3150-17 C19 12SM3134-5 GM10054B-1 12 SM3134-5 GM10054B-2 12SM3137-40 GM10055B-1 12 SM2828-28 GM10055B-1 12SM3150-17 GM10055B-1 12 SM3134-5 C243 12SM3150-17 GM7673-3 12 SM3134-5 GM7673-3 12COL1722 HMC1 12 C33 HB60 12GM7673-3 SM2834-31 12 COL1505 GM7673-3 14VENEZOLANA C243 12 COL1505 C243 14GM11129-11 SM4517-33 12 CR138 GM10055B-1 14GM11129-27 SM4517-33 12GM11129-27 SM4534-37 12GM11129-35 GM4883-1 12GM11194-2 SM4524-28 12SM4516-40 C243 12SM4516-40 GM11129-11 12SM4517-30 GM4883-3 12SM4524-28 GM10054B-1 12SM4534-37 GM4781-2 12SM4534-37 GM4781-2 12

    CMD Resistance in the GS Population from CIAT

    CIAT

    AGI, Vietnam

    Outcomes:GS models for CMD and agronomic traitsQTL and diagnostic makers

  • Implement Genomics-assisted Breeding

    *SIT, Seed Increase Trial; TPY, Training Population Yield trial; PYT, Preliminary Yield Trial; AYT, Advanced Yield Trial

  • GS Facilitates Collaboration

    Send seeds of the training populations to partners and develop GS models specific for the TPE of partners.

    CIAT positions “upstream” to provide elite parents and adapted progeny to partners.

  • Acknowledgements

    Slide Number 1Slide Number 2Slide Number 3Slide Number 4Slide Number 5Slide Number 6Slide Number 7Slide Number 8Slide Number 9Slide Number 10Slide Number 11Slide Number 12Implement Genomics-assisted BreedingSlide Number 14Slide Number 15


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