Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm)...

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Transcript of Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm)...

Page 1: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 2: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 3: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 4: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 5: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 6: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 7: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

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Page 8: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

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Page 9: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 10: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 11: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 12: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 13: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 14: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 15: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 16: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 17: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

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Page 18: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 19: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 20: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

Dimer134 kDa

Trimer205 kDa

Monomer66 kDa

Page 21: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

small molecules radius < 15 nm Pθ = 1 for all θ

large molecules radius > 15 nm Pθ = 1 for θ = 0°

Page 22: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

Intramolecular interference produces a disymmetry in the scattered light.

Size of molecule/particle must be significant compared to wavelength of light

Page 23: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

with

Angular Dependence

Radius [nm] 3 15 50 150

Page 24: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

Low Angle Light Scattering - LALS

Page 25: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

Proteins Mol. Weight (D) Rh (nm)

Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000 3.40 IgG 150,000 5,02 Catalase 250,000 5.38 Thyroglobulin 660,000 7.50

RALS ---------------------------------------------------------------------

LALS IgM 900,000 11.7 DNA 3 Mio 70

Polysaccharides/PEG

MW Rh (nm) 12,000 2.62 50,000 5.62 80,000 7.27 150,000 9.81 RALS -----------------------------------

LALS 270,000 12.74 410,000 15.07 670,000 18.45

Relationship between Size and Molecular Weight

Page 26: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

0.0

119 .5

12.0

24.0

36.0

48.0

60.0

72.0

84.0

96.0

108.0

Rig

ht A

ngle

Lig

ht S

catte

ring

Res

pons

e (m

V)

0.0

56.7

6.0

12.0

18.0

24.0

30.0

36.0

42.0

48.0

Low

Ang

le L

ight

Sca

tterin

g R

espo

nse

(mV

)

10.50 16.60Retention Volume (mL)

11 .5 12.0 12.5 13.0 13.5 14.0 14.5 15.0 15.5

RALS LALS

Page 27: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 28: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

Intrinsic viscosity is the concentration normalized viscosity of the sample in solution at infinite dilution.

ηsp is called the specific viscosity of the solution whose concentration is C. ηo is the Solvent Viscosity. η is the Solution Viscosity.

In GPC, concentrations of solutions are sufficiently dilute that the extrapolation to zero concentration is negligible.

Page 29: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

Intrinsic Viscosity is inverse proportional to the density

Intrinsic Viscosity x Molecular weight is proportional to the hydrodynamic radius of a sample

Intrinsic Viscosity: from Viscosity Detector Molecular Weight: from Light Scattering Detector

Page 30: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

IP

+ -

DP-+GPC IN OUT

Solvent

Wheatstone bridge concept M. Haney, 1983

Sample

Page 31: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

BSA

Hydrodynamic Radius

6,2 nm 5,1 nm

3,8 nm

Page 32: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

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Page 33: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

×× ×

× ×

× ×

× × ×

Page 34: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

Monomer Dimer

Trimer

0,0

1472,0

82,0 164,0 246,0 328,0 410,0 492,0 574,0 656,0 738,0 820,0 902,0 984,0

1066,0 1148,0 1230,0 1312,0 1394,0

Ref

ract

ive

Inde

x R

espo

nse

(mV

)

4,000

7,000

4,200 4,400 4,600 4,800 5,000 5,200 5,400 5,600 5,800 6,000 6,200 6,400 6,600 6,800

Log

Mol

ecul

ar W

eigh

t

0,0

239,0

14,0 28,0 42,0 56,0 70,0 84,0 98,0 112,0 126,0 140,0 154,0 168,0 182,0 196,0 210,0 224,0

Rig

ht A

ngle

Lig

ht S

catte

ring

Res

pons

e (m

V)

0,0

36,0

2,0 4,0 6,0 8,0

10,0 12,0 14,0 16,0 18,0 20,0 22,0 24,0 26,0 28,0 30,0 32,0 34,0

Visc

omet

er D

P R

espo

nse

(mV

)

5,30 10,00 Retention Volume (mL)

5,6 5,8 6,0 6,2 6,4 6,6 6,8 7,0 7,2 7,4 7,6 7,8 8,0 8,2 8,4 8,6 8,8 9,0 9,2 9,4 9,6

Monomer

Dimer Trimer

High MW Aggregates (Mw > 1 Mio D)

Mw (D) IVw (dl/g) Rh (nm) Weight Fraction (%)

Monomer 66.430 0,056 3,88 87

Dimer 133.000 0,071 5,32 11

Trimer 201.000 0,095 6,69 1,5

Light Scattering Viscometer Refractive Index

BSA

Page 35: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 36: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 37: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 38: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

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Page 39: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

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Page 40: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

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Page 41: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

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Page 42: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

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Page 43: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

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Page 44: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 45: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

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Page 46: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000
Page 47: Sample preparation and characterization around SAXS · Proteins Mol. Weight (D) Rh (nm) Ribonuclease 13,700 1.93 b-Lactoglobulin 35,000 2.67 Serum albumin 65,000 3.38 Hemoglobin 68,000

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