NetworkPainter Tutorial #1Creating Network Models

Jonathan R. Karrjkarr@stanford.edu

Graduate Program in BiophysicsStanford University

Gene Expression

IB

IKK

mRNA

mRNA

NF-B

NF-B

Protein

Receptor Receptor

Signal Signal

NF-kB.swfMedia File (application/x-shockwave-flash)

Tutorial #1Creating Network Models

Register a NetworkPainter useraccount

Create an NF-B network model

Export images of the NF-Bnetwork

Save the network to theNetworkPainter database

Tutorial #2Visualizing Experimental Data

Open the saved NF-B network

Associate the network withexperimental data

Export animations of the NF-Bnetwork

Tutorial #3Advanced Topics

Automatic network layout

Advanced rendering options

Collaboration: sharing & publishingnetworks

Tutorial #1Creating Network Models

Register a NetworkPainter useraccount

Create an NF-B network model

Export images of the NF-Bnetwork

Save the network to theNetworkPainter database

Tutorial #2Visualizing Experimental Data

Open the saved NF-B network

Associate the network withexperimental data

Export animations of the NF-Bnetwork

Tutorial #3Advanced Topics

Automatic network layout

Advanced rendering options

Collaboration: sharing & publishingnetworks

Tutorial #1Creating Network Models

Register a NetworkPainter useraccount

Create an NF-B network model

Export images of the NF-Bnetwork

Save the network to theNetworkPainter database

Tutorial #2Visualizing Experimental Data

Open the saved NF-B network

Associate the network withexperimental data

Export animations of the NF-Bnetwork

Tutorial #3Advanced Topics

Automatic network layout

Advanced rendering options

Collaboration: sharing & publishingnetworks

Outline

Navigate tocovertlab.stanford.edu/projects/NetworkPainter

Explore website gallery, tutorials, help

Register new user account

Login to NetworkPainter

Demonstrating creating new network in diagram mode

Save network to database

Logout

covertlab.stanford.edu/projects/NetworkPainter

Summary

Registered a new NetworkPainter user account

Created an NF-B network model

Exported images the NF-B network

Saved the network the NetworkPainter database

Next Time

Reopen the saved NF-B network

Associate the network with experimental data

Export animations of the NF-B network

Questions

covertlab.stanford.edu/projects/NetworkPainter