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Volume 5, Issue 1 (2016) ISSN 2320–0421(Print); ISSN 2320–043X(Online) © 2016 DAMA International. All rights reserved. 9
ISOLATION AND IDENTIFICATION OF Α-AMYLASE PRODUCING PSYCHROTROPHIC
ENTEROBACTER SP. NACASA2
Umesh U. Jadhav1, Sachin B.
Chavan
2,
Vishal V. Dawkar
3, Ashok D. Chougale
4 and Manohar V. Padul
5*
1Department of Power Mechanical Engineering, National Tsing Hua University, No. 101, Sec.2, Kuang Fu Rd., 30013,
Hsinchu, Taiwan ROC. 2P.G. Department of Biochemistry, N.A.C. & S. College, Ahmednagar-414 001, Affiliated to University of Pune, India.
3Plant Molecular Biology Unit, Division of Biochemical Sciences, National Chemical Laboratory, Pune, India.
4Mass Spectrometry
and Proteomics group Organic Chemistry Division, National Chemical Laboratory, Pune, India
5Department of Biochemistry, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad-431004, India
*(Corresponding author Email: [email protected])
ABSTRACT
This study reported the isolation and characterization of cold adapted Enterobacter sp. NACASA2. The ability of
this bacterium, isolated from garden soil, to biosynthesize α-amylase was investigated. Maximum α-amylase
production was obtained at 24 h of incubation (56.13 U/mg protein/min). The optimal temperature and pH were 35
°C and 7.0, respectively, for growth and enzyme production. Enterobacter sp. NACASA2 showed maximum
amylase production with starch and tryptone. The bacterium withstands 0.8% NaCl concentration in medium. The
enzyme production was slightly inhibited by 10 mM, Zn2+
(19.11%) and Cu2+
(32.56%) while strongly inhibited by
Hg2+
(100%).
KEY WORDS: α-amylase, Cold adapted bacterium, Salt tolerance.
INTRODUCTION
A diverse range of microbes have been discovered in cold environments and include representatives of the bacteria,
eucarya and archaea (Cavicchioli and Thomas, 2000). Their cold-active or cold adaptive enzymes have received a great
deal of attention because they are essential in some fundamental scientific study areas and have the ability to withstand
certain industrial reaction conditions (Deming 1998). The high flexibility of cold-active enzymes enables increased
complementarities between the active site and substrate, at a low-energy cost, resulting in high specific activity at low
temperatures (Cavicchioli et al 2002). Likewise, the high activity of cold- adaptive enzymes at low and moderate
temperatures offers potential economic benefits (Gerday 2000). Isolation of industrially important cold-adapted
enzymes like α-amylase, cellulase, β-galactosidase, lipase, proteases, etc has been done previously Cavicchioli et al
2002.
α-amylase (EC 3.2.1.1) are glycoside hydrolases which cleave the α-1,4-glycosidic linkages in starch and maltodextrins
with an endo mechanism, i.e., in a random fashion within the polysaccharide molecule (Ballschmiter et al 2006).
Enzymatic hydrolysis of starch by α-amylase yielding a mixture of maltose and glucose has wide applications in
industry. It is used in brewing and fermentation industries for the conversion of starch to fermentable sugars (Farid et al
2002), in the textile industry for designing textiles and in the laundry industry in a mixture with protease and lipase to
launder clothes (Upadek and Kottwitz 1997; Ito et al 1998), in the paper industry for sizing (Maarel et al 2002), and in
the food industry for preparation of sweet syrups (Rao and Satyanarayana 2003).
Recent microbial studies of the deep sea have led to significant new discoveries of unusual microbial diversity, new
species and cold-adaptive enzymes (Feller and Gerday 2003). Cold adapted α-amylase was isolated and purified from
Nocardiopsis strain that was isolated from deep sea sediments (Zhang and Zeng 2008). In the present research we
isolated Enterobacter sp. NACASA2, which was able to produce α-amylase at low temperature. This work is in an
incipient stage and further studies may exploit the potential of Enterobacter sp. NACASA2 for pilot and large scale
applications.
MATERIALS AND METHODS
Screening, isolation of microorganism and culture conditions
Garden soil collected from botanical garden of N.A.C. & S. College, Ahmednagar, India was used for screening of α-
amylase producing bacterial strains. One gram soil was added to 100 ml Bushnell and Hass medium. The composition
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of medium was magnesium sulphate 0.20, calcium chloride 0.02, monopotassium phosphate 1.0, dipotassium
phosphate 1.0, ammonium nitrate 1.0, ferric chloride 0.05 and starch 2.0 g/l. The flasks were incubated at 15 ◦C under
shaking (120 rpm) as well as static condition. The culture showing α-amylase production at static condition was
acclimatized by transferring 5 ml aliquots from the flask to the fresh starch-containing medium with various
concentration of starch increased from 0.2 to 1%. The starch-containing agar plates were inoculated with 0.1 ml
suspension from these flasks. The isolated colonies were transferred to the starch-containing Bushnell and Hass
medium and selected on the basis of high α-amylase activity. Out of these isolates one showing high α-amylase
production under static condition was identified as NACASA2 and used for further study. The pure culture was
maintained on starch-containing agar slants at 40C.
16S rDNA sequencing
16S rDNA sequencing of isolated bacteria was carried out at “Molecular diagnostic center”, Pune, India. The
nucleotide sequence analysis of the sequence was done at Blast-n site at NCBI server
(http://www.ncbi.nlm.nih.gov/BLAST). The sequence was refined manually after crosschecking with the raw data to
remove ambiguities and submitted to the NCBI, the accession number is HM179100. The evolutionary history was
inferred using the Neighbor-Joining method (Saitou and Nei 1987). The optimal tree with the sum of branch length =
1.53397188 is shown (Fig. 1). The percentage of replicate trees in which the associated taxa clustered together in the
bootstrap test (500 replicates) is shown next to the branches (Felsenstein 1985). The evolutionary distances are
computed using the Maximum Composite Likelihood method(Tamura et al 2004) and are in the units of the number of
base substitutions per site. All positions containing gaps and missing data were eliminated from the dataset (Complete
deletion option). There were a total of 204 positions in the final dataset. Phylogenetic analyses were conducted in
MEGA4(Tamura et al 2007).
Assay for α-amylase enzyme activity
Amylase activity was determined by detecting the amount of reducing sugars liberated. The reaction mixture (1 ml)
contained 0.25 ml of 1% soluble starch, 0.25 ml of 0.4 M Tris-HCl buffer (8.0) and 0.5 ml of enzyme (obtained from
Enterobacter sp. NACASA2). The reaction was terminated by addition of 2 ml of 3, 5-dinitrosalycylic acid reagent
after incubation for 30 min (Sengupta 2000). The protein concentration was measured with bovine serum albumin as a
standard (Lowry, 1951).
Effect of incubation temperature and pH on α-amylase production
Temperature and pH for maximum α-amylase production was quantified. Variable temperature (0 to 45 0C) and pH
range (1 to 9) were employed for production of α-amylase. The initial pH of Bushnell and Hass medium was adjusted
using concentrated HCl/NaOH. For the study of effect of temperature the flask were incubated at various temperatures.
Optimization of carbon sources
Different carbon sources (xylose, lactose, maltose, and sucrose) were used at a concentration of 1.0% (w/v). These
were used to replace starch in standard growth medium. The flasks were incubated at 15 °C.
Optimization of nitrogen sources
Different nitrogen sources (ammonium sulphate, peptone, ammonium per sulphate, beef extract, malt extract, and
tryptone) at a concentration of 1.0% (w/v) were used. The flasks were incubated at 15 °C.
Effect of various concentration of sodium chloride on amylase production
The effect of various concentrations of sodium chloride on α-amylase production was studied. Various concentrations
of sodium chloride (0.2, 0.4, 0.6, 0.8 and 1.0%) were added in culture medium. The flasks with various concentrations
of sodium chloride were inoculated with Enterobacter sp. NACASA2. After incubation at 15 0C for 24 h the amylase
production was measured and compared with control (without sodium chloride).
Effect of various metal ions on amylase production
The effect of metal ions on α-amylase production was measured. Various metal ions were added in culture medium at a
concentration of 10 and 100 mM respectively. Metals used were Zn2+
, Cu2+
and Hg2+
. The flasks with metal ions were
inoculated with Enterobacter sp. NACASA2. After incubation at 15 0C for 24 h the amylase production was measured
and compared with control (without metal).
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Statistical analysis
Data were analyzed by one-way analysis of variance (ANOVA) with Tukey-Kramer multiple comparisons. Readings
were considered significant when **P was <0.01, and ***P<0.001. Graphpad software was used for this analysis.
RESULTS AND DISCUSSION
Isolation and identification of α-amylase producing bacteria
Several isolates were obtained during enrichment process. Potential isolate was selected and used for further studies on
the basis of rapid and extensive growth on starch and designated as NACASA2. Typical cultural morphologies of
isolate on starch agar were tiny, circular, pale yellow colored and entire. Cellular characteristics revealed Gram-
negative motile rods (Table I).
Table 1. Colony characteristics of Enterobacter sp. NACASA2
Various biochemical tests were performed for the identification and characterization of bacteria. The isolate was
catalase, citrate positive, and indole, methyl red negative. We also checked the ability of this isolate to utilize various
sugars. Starch was hydrolyzed and most sugars were utilized (data not shown).
Figure 1. Phylogenetic tree of the Enterobacter sp. NACASA2 and related organisms were aligned based on 16S
rDNA sequences (neighbor-joining tree).
SIZE SHAPE COLOR MARGIN OPACITY ELEVATION CONSISTENCY GRAM’S
NATURE
MOTILITY
1MM CIRCULAR PALE
YELLOW
ENTIRE OPAQUE RAISED SMOOTH GRAM
NEGATIVE
MOTILE
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The 16S rDNA amplicon of the isolate was used to determine the sequence of the nucleotides. The sequence was
submitted to NCBI. The accession number for the sequence is HM179100. A BLASTn search was undertaken to find
out the similarity of the sequence with the most similar 16S rDNA sequences of the GenBank database. The sequence
of 16S rDNA of the strain was aligned to related sequences retrieved from the database to construct a phylogenetic tree
(Fig. 1). Comparison with 16S rDNA sequences available in the GenBank database revealed that NACSA2 is closely
related to species belonging to the genus Enterobacter. Therefore the name to this strain is designated as Enterobacter
sp. NACASA2. There is a report in literature on α-amylase production by Enterobacter cloacae IIT-BT08 (Kumar and
Das 2000).
Effect of incubation time on amylase production
The enzyme production was initiated within 12 h and further increased in exponential phase. Maximum amylase
production was obtained at 24 h of incubation (56.13 U/mg protein/min) (Fig. 2). Maximum production of amylase was
obtained after 24 h in Bacillus cereus (Anto et al 2006) and Bacillus subtillis (Asgher et al 2007). Production of
amylase at comparatively earlier stages of fermentation suggested the usefulness of the strain for enzyme production.
Figure 2. Effect of incubation time on amylase production.
Effects of temperature and pH on amylase production
Temperature has been identified as a factor controlling secretion of extra cellular enzymes and their activity in
psychrophilic bacteria (Barbaro et al., 2001). The production of α-amylase by Enterobacter sp. NACASA2 was
measured at various temperatures at pH 7.0. The Enterobacter sp NACASA2 showed production of enzyme between
15 to 45 0C and the optimum temperature for production was at 35
0C (Figure 3).
This is in agreement with the previous observations (Zhang and Zeng 2008). Enterobacter sp. NACASA2 was able to
produce significant amount of amylase enzyme at 15 0C. Psychrotroph is essentially a mesophilic microorganism that
can also grow under cold conditions below 15 0C (Takeshi et al 2001). The cold adaptation of this microorganism is
likely to be due to, at least in part, its ability to produce cold-active enzymes which exhibit higher catalytic activities at
low temperatures than its mesophilic and thermophilic counterpart’s do (Margesin and Shinner 1994). Recently, much
attention has been made to the application of psychrotrophs, and their cold-active enzymes in biotechnology (Gerday et
al 2000). For example, cold-active hydrolases such as proteinases, amylases, cellulases and lipases from
microorganisms have been used as additives in laundry detergent (Margesin and Shinner, 1994).
0
10
20
30
40
50
60
0 12 24 36 48
Time (h)
Enzy
me
acti
vit
y (
U/m
g p
rote
in/m
in) Enzyme
activity
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Figure 3. Effect of temperature and pH on amylase production.
The enzyme is very sensitive to pH. Therefore the selection of pH is very essential for the production of α-amylase
(McMahon et al 1999). The effect of initial pH of the medium was studied (Fig. 3). Most of the Bacillus amylase has
optimum pH values of from 5.0-8.5 (Burhan 2007; Liu and Yan 2008) and an acidic amylase from Bacillus
acidocaldarius has an optimal pH of 3.5 (Mutuso 1986). Alkaline amylases reported previously had optimum pH
values of 9.0 to 11.0 (Burhan et al 2003). However, we found Enterobacter sp. NACASA2 has an optimal pH value of
7.0 for amylase production. Also Enterobacter sp. NACASA2 showed broad pH range of 1.0 to 9.0. Similar broad pH
range of 3-8 for α-amylase production was also reported (Gupta et al 2008).
Effects of carbon and nitrogen source on amylase production
Carbon sources have been shown to have different effects on amylase production (Farez-Vidal et al 1992). The
influence of the carbon source on α-amylase production by Enterobacter sp. NACASA2 was investigated using
different carbon sources as shown in Fig. 4. Enterobacter sp. NACASA2 showed maximum amylase production with
starch. Sucrose also supported the amylase production. Xylose showed lowest amylase production. Our results are in
good agreement with previous findings who obtained greater production with starch as the sole carbon source (Fang
and Demain 1989). Also similar observations were reported by other researchers (Gupta et al 2008; Ezeji 2005). In
contrast to this the enzyme production by B. subtilis was higher with glucose than with starch (Jamuna and
Ramakrishna 1992). Rhamnose is reported as the best carbon source for the production of enzyme (Jamuna and
Ramakrishna 1992).
Effect of the nitrogen source on the α-amylase productivity from Enterobacter sp. NACASA2 was studied using
various nitrogen sources having starch (1%) as the carbon and energy source (Fig. 5).
Tryptone was found to be the best nitrogen source for the production of enzyme. After tryptone, malt extract showed
good amylase production. Enterobacter sp. NACASA2 showed least amylase production in the presence of ammonium
sulphate as compared to other nitrogen source. Several workers reported various nitrogen sources as stimulators for
enzyme production (Gupta et al 2008; Ezeji 2005; Jana and Pati 2007).
0
10
20
30
40
50
60
70
15 25 35 45
1 3 5 7 9
Temperature/pH
Enzy
me
acti
vit
y (
U/m
g p
rote
in/m
in)
for
pH
0
20
40
60
80
100
120
U/m
g p
rote
in/m
in)
for
tem
per
ature
pH
Temperature
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Effect of salt concentration on the production of amylase
The salinity was found to be a significant factor in the production of amylase. The Enterobacter sp. NACASA2 showed
amylase production in a medium supplemented with NaCl. The amylase production was optimum in the medium
supplemented with 0.8% NaCl (Figure 6).
Figure 4. Effect of various carbon sources on amylase production.
Figure 5. Effect of various nitrogen sources on amylase production
0
20
40
60
80
100
120
Xylose Lactose Maltosr Sucrose Starch
Carbon source
Enzy
me
acti
vit
y (
U/m
g p
rote
in/m
in)
Enzyme activity
0
5
10
15
20
25
30
35
40
Ammonium
sulphate
Peptone Ammonium
per sulphate
Beef extract Malt extract Tryptone
Nitrogen source
En
zy
me a
cti
vit
y (
U/m
g p
rote
in/m
in)
Enzyme activity
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Figure 6. Effect of various concentrations of NaCl on amylase production.
The amylase activity was approximately 75% higher than that of the control. Similar results were reported by others
(Shanmughapriya et al 2009).
Effect of metal ions on the production of amylase
The production of amylase by Enterobacter sp. NACASA2 was assayed in the presence of 10 and 100 mM of various
metal ions. As shown in Table II the enzyme production was strongly inhibited by Hg2+
.
Table 2. Effect of metal ions on amylase production
Metals Concentration (mM) Percent inhibition (%)
Control 0 0
Zn2+
10 19.11
100 90.44
Cu2+
10 32.56
100 95.87
Hg2+
10 100
The enzyme production was slightly inhibited by 10 mM Cu2+
, and Zn2+
. The effect of Zn2+
also varied between
amylases. For instance, it had a potent inhibitory effect on the amylases from Bacillus SMIA2 and Bacillus A3-15
(Burhan 2007; Carvalho et al 2008); on the other hand, slight inhibition in the activity of the enzyme observed in
Bacillus cohnii US147 and Bacillus subtilis JS- 2004 (Asgher et al 2007; Raoudha et al 2009). It had no effect at all on
the enzyme of anaerobic archeon strain HJ21 and Aspergillus kowashii (Wang et al 2008). Copper strongly inhibited
the enzymatic activity from Bacillus subtilis JS-2004, Bacillus sp. Strain SMIA2 and Bacillus sp. strain KSM-1378
(Asgher et al 2007; Raoudha et al 2009).
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