Όλγα Βρούσγου

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    18-Jan-2017
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Transcript of Όλγα Βρούσγου

  • 2 2015

  • 2

    1.

    2.

    3.

    4.

    5. HellasGrid

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    12. /

    13.

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    Human Genome Project

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    (Grid)

    BLAST Phylogenetic Profiles MCL Clustering

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    BLAST Phylogenetic Profiles

    MCL Clustering

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    The Grid HellasGrid

    Scalability

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    HellasGrid

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    FASTA (txt)

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    Parametric Jobs

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    Job Handler

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    Job Collection

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    MCL Clusters

    Report E-mail

    Parser Scripts Cleanup/Download Scripts

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    BLAST & MCL BLAST & Phylogenetic

    Profiles BLAST & Phylogenetic

    Profiles & MCL BLAST & Phylogenetic

    Profiles & MCL x2

    BLAST & Phylogenetic Profiles & MCL x2 ALL Vs - ALL

    Split Database Split Query

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    BLAST : (*) MCL : (n*k^2) Phyl. P. : (^2**)

    ALL Vs ALL : : [^3] . query: [^3/P] . : [^3/K]

    M = No. DB sequences N = No. Query sequences K = No. Genomes in DB P = No. Pieces Query Split P > K

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    (1)

    BLAST

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    (2)

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    (3)

    Test Cases

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    (4)

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    (5)

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    (6)

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    (7)

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    (8)

    Plants Pangenome

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    14.1x ~ 0.5 M

    Split Query vs Split DB

    User Interface mpi-blast

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    /

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    . .

    23rd Annual International Conference on Intelligent Systems for Molecular Biology

    14th European Conference on Computational Biology

    July 2015

    Poster

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